Package index • rutils

All functions

Bioinformatics: Bioinformatics
llrs_cnag_project_file() llrs_cnag_stats_file() llrs_cnag_id(): File names of the CNAG projects.
llrs_add_member(): Add a contributor to the registry
llrs_box(): Create positions of a box
llrs_cellranger_aggr(): Aggregate several cellranger output
llrs_cellranger_clean(): Clean cellranger multi output
llrs_change_role(): Remove role of a contributor
llrs_check_pkg_version(): Check package version
llrs_cnag_deliver(): Read the delivery file
llrs_cnag_files(): Prepare CNAG data for cellranger
llrs_cnag_samples(): Create a sample sheet from files
llrs_cnag_stats(): Read the CNAG stats
llrs_cnag_symlinks(): Create symlinks
llrs_copy_config(): Copy config to config repository
llrs_diff(): Add column with
llrs_download(): Download a file
llrs_figures(): Creates path for a figure
llrs_funding(): Funding
llrs_governance(): Add the governance
llrs_hook(): Insert hook
llrs_hooks_list(): List existing hooks
llrs_notify_system(): Use system's notify-send to send a message
llrs_profile(): Provide a R global user profile
llrs_results(): Creates path for results
llrs_send_email(): Send a quick email
llrs_send_ntfy(): Send a message to the NTFY address
llrs_share(): Create a link to a shared file
llrs_shiny_create(): Create shiny app
llrs_shiny_hook(): Creates new shiny app and add hooks.
llrs_tar_load() llrs_tar_read(): Functions helping with targets
llrs_toots(): Send toot
llrs_upload(): Upload a file to Microsoft cloud in One Drive
llrs_rstudio_set() llrs_rstudio_default() llrs_rstudio_restore(): Switch between Rstudio configurations.